All electronic structure calculations were performed using
the density functional theory (DFT) method (see e.g. ref. DFT).
We used the Becke-88 gradient corrected exchange functional[67] and the
Perdew-86 gradient corrected correlation functional.[38]
The ab initio (DFT) molecular dynamics calculations of the systems
including the solvent environment were done with the Car-Parrinello (CP)
method[49] as implemented in the CP-PAW code developed by Blöchl[24].
The one-electron valence wave functions were expanded in an
augmented plane wave basis up to a kinetic energy cutoff of 30 Ry.
The frozen core approximation was applied for the 1s electrons of O,
and up to 3p for Fe. For the augmentation for H and O, one
projector function per angular-momentum quantum number was used for
- and
-angular momenta. For Fe, one projector function was
used for
and
and two for
-angular momenta.
The characteristic feature
of the Car-Parrinello approach is that the electronic wave function,
i.e. the coefficients of the plane wave basis set expansion,
are dynamically optimized to be consistent with the changing
positions of the atomic nuclei. The mass for the wave function coefficient
dynamics was
=1000 a.u., which limits the MD timestep
to
fs. To maintain a constant temperature of
K, a
Nosé thermostat [69] was applied with a period of 100
femto-second. Periodic boundary conditions were applied to the cubic
systems containing one iron ion, one hydrogen peroxide molecule and
31 water molecules. The size of the cubic box was 9.900 Å.
The positive charge of the systems was compensated
by a uniformly distributed counter charge.